Invited Reviews:

Joseph S. Verducci, Vincent F. Melfi, Shili Lin, Zailong Wang, Sashwati Roy, and Chandan K. Sen

Microarray analysis of gene expression: considerations in data mining and statistical treatment
Physiol. Genomics 25: 355-363, 2006. First published March 22, 2006; doi:10.1152/physiolgenomics.00314.2004 [Abstract] [Full Text] [PDF]  

Research Articles:

Sashwati Roy, Savita Khanna, Donald E. Kuhn, Cameron Rink, Willis T. Williams, Jay L. Zweier, and Chandan K. Sen

Transcriptome analysis of the ischemia-reperfused remodeling myocardium: temporal changes in inflammation and extracellular matrix
Physiol. Genomics 25: 364-374, 2006. First published March 22, 2006; doi:10.1152/physiolgenomics.00013.2006 [Abstract] [Full Text] [PDF] [Supplementary Tables]  

Peter S. T. Yuen, Sang-Kyung Jo, Mikaela K. Holly, Xuzhen Hu, and Robert A. Star

Ischemic and nephrotoxic acute renal failure are distinguished by their broad transcriptomic responses
Physiol. Genomics 25: 375-386, 2006. First published February 28, 2006; doi:10.1152/physiolgenomics.00223.2005 [Abstract] [Full Text] [PDF] [Supplemental Figures and Tables]  

Susanne Korff, Frank Schoensiegel, Nora Riechert, Dieter Weichenhan, Hugo A. Katus, and Boris T. Ivandic

Fine mapping of Dyscalc1, the major genetic determinant of dystrophic cardiac calcification in mice
Physiol. Genomics 25: 387-392, 2006; doi:10.1152/physiolgenomics.00010.2006 [Abstract] [Full Text] [PDF]  

Matthias Bauer, Jörg D. Katzenberger, Anne C. Hamm, Melanie Bonaus, Ingo Zinke, Jens Jaekel, and Michael J. Pankratz

Purine and folate metabolism as a potential target of sex-specific nutrient allocation in Drosophila and its implication for lifespan-reproduction tradeoff
Physiol. Genomics 25: 393-404, 2006. First published March 28, 2006; doi:10.1152/physiolgenomics.00009.2006 [Abstract] [Full Text] [PDF] [Supplemental Tables] [Additional Supplemental Data]  

Joshua H. Larson, Charu G. Kumar, Robin E. Everts, Cheryl A. Green, Annelie Everts-van der Wind, Mark R. Band, and Harris A. Lewin

Discovery of eight novel divergent homologs expressed in cattle placenta
Physiol. Genomics 25: 405-413, 2006. First published March 22, 2006; doi:10.1152/physiolgenomics.00307.2005 [Abstract] [Full Text] [PDF] [Supplemental Tables and Figures]  

Laura E. Ellestad, Wilfrid Carre, Michael Muchow, Sultan A. Jenkins, Xiaofei Wang, Larry A. Cogburn, and Tom E. Porter

Gene expression profiling during cellular differentiation in the embryonic pituitary gland using cDNA microarrays
Physiol. Genomics 25: 414-425, 2006. First published February 21, 2006; doi:10.1152/physiolgenomics.00248.2005 [Abstract] [Full Text] [PDF] [Supplemental Tables]  

Maike F. de Buhr, Michael Mähler, Robert Geffers, Wiebke Hansen, Astrid M. Westendorf, Jörg Lauber, Jan Buer, Brigitte Schlegelberger, Hans J. Hedrich, and Andre Bleich

Cd14, Gbp1, and Pla2g2a: three major candidate genes for experimental IBD identified by combining QTL and microarray analyses
Physiol. Genomics 25: 426-434, 2006; doi:10.1152/physiolgenomics.00022.2005 [Abstract] [Full Text] [PDF]  

S. M. Mense, A. Sengupta, M. Zhou, C. Lan, G. Bentsman, D. J. Volsky, and L. Zhang

Gene expression profiling reveals the profound upregulation of hypoxia-responsive genes in primary human astrocytes
Physiol. Genomics 25: 435-449, 2006. First published February 28, 2006; doi:10.1152/physiolgenomics.00315.2005 [Abstract] [Full Text] [PDF] [Supplemental Tables]  

Jianguo Li, Marta Bosch-Marce, Ashika Nanayakkara, Vladimir Savransky, Susan K. Fried, Gregg L. Semenza, and Vsevolod Y. Polotsky

Altered metabolic responses to intermittent hypoxia in mice with partial deficiency of hypoxia-inducible factor-1
Physiol. Genomics 25: 450-457, 2006. First published February 28, 2006; doi:10.1152/physiolgenomics.00293.2005 [Abstract] [Full Text] [PDF]  

Yuehua Cui, Jun Zhu, and Rongling Wu

Functional mapping for genetic control of programmed cell death
Physiol. Genomics 25: 458-469, 2006. First published February 7, 2006; doi:10.1152/physiolgenomics.00181.2005 [Abstract] [Full Text] [PDF]  

Tiffany A. Greenwood, Fangwen Rao, Mats Stridsberg, Nitish R. Mahapatra, Manjula Mahata, Elizabeth O. Lillie, Sushil K. Mahata, Laurent Taupenot, Nicholas J. Schork, and Daniel T. O’Connor

Pleiotropic effects of novel trans-acting loci influencing human sympathochromaffin secretion
Physiol. Genomics 25: 470-479, 2006. First published March 22, 2006; doi:10.1152/physiolgenomics.00295.2005 [Abstract] [Full Text] [PDF]  

Sophie Le Fur, Cédric Auffray, Franck Letourneur, Corinne Cruaud, Catherine Le Stunff, and Pierre Bougnères

Heterogeneity of class I INS VNTR allele association with insulin secretion in obese children
Physiol. Genomics 25: 480-484, 2006. First published March 28, 2006; doi:10.1152/physiolgenomics.00311.2005 [Abstract] [Full Text] [PDF]  

E. Pecchi, M. Dallaporta, S. Thirion, C. Salvat, F. Berenbaum, A. Jean, and J.-D. Troadec

Involvement of central microsomal prostaglandin E synthase-1 in IL-1ß-induced anorexia
Physiol. Genomics 25: 485-492, 2006. First published March 22, 2006; doi:10.1152/physiolgenomics.00306.2005 [Abstract] [Full Text] [PDF]  

Scott J. Neal, Shanker Karunanithi, Adrienne Best, Anthony Ken-Choy So, Robert M. Tanguay, Harold L. Atwood, and J. Timothy Westwood

Thermoprotection of synaptic transmission in a Drosophila heat shock factor mutant is accompanied by increased expression of Hsp83 and DnaJ-1
Physiol. Genomics 25: 493-501, 2006. First published April 4, 2006; doi:10.1152/physiolgenomics.00195.2005 [Abstract] [Full Text] [PDF] [Supplementary Tables and Figures]  

Anand C. Patel, Jeffrey D. Morton, Edy Y. Kim, Yael Alevy, Suzanne Swanson, Jennifer Tucker, Guaming Huang, Eugene Agapov, Thomas E. Phillips, Maria E. Fuentes, Antonio Iglesias, Dee Aud, John D. Allard, Karim Dabbagh, Gary Peltz, and Michael J. Holtzman

Genetic segregation of airway disease traits despite redundancy of calcium-activated chloride channel family members
Physiol. Genomics 25: 502-513, 2006. First published March 28, 2006; doi:10.1152/physiolgenomics.00321.2005 [Abstract] [Full Text] [PDF] [Supplementary Figures]  

Toolbox:

Wilfrid Carre, Xiaofei Wang, Tom E. Porter, Yves Nys, Jianshan Tang, Erin Bernberg, Robin Morgan, Joan Burnside, Samuel E. Aggrey, Jean Simon, and Larry A. Cogburn

Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index
Physiol. Genomics 25: 514-524, 2006. First published March 22, 2006; doi:10.1152/physiolgenomics.00207.2005 [Abstract] [Full Text] [PDF] [Supplemental Table and Figures]  

Nili Jin, Keyu He, and Lin Liu

qPCR-DAMS: a database tool to analyze, manage, and store both relative and absolute quantitative real-time PCR data
Physiol. Genomics 25: 525-527, 2006. First published February 28, 2006; doi:10.1152/physiolgenomics.00233.2005 [Abstract] [Full Text] [PDF]  

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