Perspectives:

Ashwin Sivakumar, Christopher Wilton, and Liisa Holm

From sequences to a functional unit
Physiol. Genomics 25: 1-8, 2006. First published January 3, 2006; doi:10.1152/physiolgenomics.00166.2005 [Abstract] [Full Text] [PDF] [Supplemental Figures]  

Call For Papers: Comparative Genomics:

K. W. Choy, C. C. Wang, A. Ogura, T. K. Lau, M. S. Rogers, K. Ikeo, T. Gojobori, D. S. C. Lam, and C. P. Pang

Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes
Physiol. Genomics 25: 9-15, 2006. First published December 20, 2005; doi:10.1152/physiolgenomics.00121.2005 [Abstract] [Full Text] [PDF] [Appendix 1]  

Research Articles:

X. Ke, Q. Lei, S. J. James, S. L. Kelleher, S. Melnyk, S. Jernigan, X. Yu, L. Wang, C. W. Callaway, G. Gill, G. M. Chan, K. H. Albertine, R. A. McKnight, and R. H. Lane

Uteroplacental insufficiency affects epigenetic determinants of chromatin structure in brains of neonatal and juvenile IUGR rats
Physiol. Genomics 25: 16-28, 2006. First published December 27, 2005; doi:10.1152/physiolgenomics.00093.2005 [Abstract] [Full Text] [PDF]  

Joseph C. Wu, Joshua M. Spin, Feng Cao, Shuan Lin, Xiaoyan Xie, Olivier Gheysens, Ian Y. Chen, Ahmad Y. Sheikh, Robert C. Robbins, Anya Tsalenko, Sanjiv S. Gambhir, and Tom Quertermous

Transcriptional profiling of reporter genes used for molecular imaging of embryonic stem cell transplantation
Physiol. Genomics 25: 29-38, 2006. First published January 3, 2006; doi:10.1152/physiolgenomics.00254.2005 [Abstract] [Full Text] [PDF] [Supplemental Video and Table]  

Michael R. Garrett, Bina Joe, and Shane Yerga-Woolwine

Genetic linkage of urinary albumin excretion in Dahl salt-sensitive rats: influence of dietary salt and confirmation using congenic strains
Physiol. Genomics 25: 39-49, 2006; doi:10.1152/physiolgenomics.00150.2005 [Abstract] [Full Text] [PDF]  

Scherise Mitchell, Asuka Ota, William Foster, Bin Zhang, Zixing Fang, Shilpa Patel, Stanley F. Nelson, Steve Horvath, and Yibin Wang

Distinct gene expression profiles in adult mouse heart following targeted MAP kinase activation
Physiol. Genomics 25: 50-59, 2006. First published December 20, 2005; doi:10.1152/physiolgenomics.00224.2005 [Abstract] [Full Text] [PDF] [Supplemental Figures and Tables]  

Anna Raffaello, Paolo Laveder, Chiara Romualdi, Camilla Bean, Luana Toniolo, Elena Germinario, Aram Megighian, Daniela Danieli-Betto, Carlo Reggiani, and Gerolamo Lanfranchi

Denervation in murine fast-twitch muscle: short-term physiological changes and temporal expression profiling
Physiol. Genomics 25: 60-74, 2006. First published December 27, 2005; doi:10.1152/physiolgenomics.00051.2005 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Katrin van Erp, Kristina Dach, Isabel Koch, Jürgen Heesemann, and Reinhard Hoffmann

Role of strain differences on host resistance and the transcriptional response of macrophages to infection with Yersinia enterocolitica
Physiol. Genomics 25: 75-84, 2006. First published December 13, 2005; doi:10.1152/physiolgenomics.00188.2005 [Abstract] [Full Text] [PDF] [Supplemental Tables]  

Erik van Lunteren, Michelle Moyer, and Patrick Leahy

Gene expression profiling of diaphragm muscle in 2-laminin (merosin)-deficient dy/dy dystrophic mice
Physiol. Genomics 25: 85-95, 2006. First published December 20, 2005; doi:10.1152/physiolgenomics.00226.2005 [Abstract] [Full Text] [PDF] [Supplemental Appendix]  

Yuichiro Nishida, Mayumi Yoshioka, and Jonny St-Amand

Regulation of hypothalamic gene expression by glucocorticoid: implications for energy homeostasis
Physiol. Genomics 25: 96-104, 2006. First published December 20, 2005; doi:10.1152/physiolgenomics.00232.2005 [Abstract] [Full Text] [PDF]  

Ningren Cui, Li Li, Xueren Wang, Yun Shi, Weiwei Shi, and Chun Jiang

Elimination of allosteric modulation of myocardial K_ATP channels by ATP and protons in two Kir6.2 polymorphisms found in sudden cardiac death
Physiol. Genomics 25: 105-115, 2006. First published January 10, 2006; doi:10.1152/physiolgenomics.00106.2005 [Abstract] [Full Text] [PDF] [Supplemental Tables and Figures]  

Rainer Fürbass, Andreas Winter, Ruedi Fries, and Christa Kühn

Alleles of the bovine DGAT1 variable number of tandem repeat associated with a milk fat QTL at chromosome 14 can stimulate gene expression
Physiol. Genomics 25: 116-120, 2006; doi:10.1152/physiolgenomics.00145.2005 [Abstract] [Full Text] [PDF]  

Chana Yagil, Marina Sapojnikov, Alexander Wechsler, Abraham Korol, and Yoram Yagil

Genetic dissection of proteinuria in the Sabra rat
Physiol. Genomics 25: 121-133, 2006. First published January 3, 2006; doi:10.1152/physiolgenomics.00235.2005 [Abstract] [Full Text] [PDF] [Supplemental Material]  

Guowen Liu, Julianne Roy, and Eric A. Johnson

Identification and function of hypoxia-response genes in Drosophila melanogaster
Physiol. Genomics 25: 134-141, 2006. First published January 10, 2006; doi:10.1152/physiolgenomics.00262.2005 [Abstract] [Full Text] [PDF]  

Mirva Piippo, Yagut Allahverdiyeva, Virpi Paakkarinen, Ulla-Maija Suoranta, Natalia Battchikova, and Eva-Mari Aro

Chloroplast-mediated regulation of nuclear genes in Arabidopsis thaliana in the absence of light stress
Physiol. Genomics 25: 142-152, 2006. First published January 10, 2006; doi:10.1152/physiolgenomics.00256.2005 [Abstract] [Full Text] [PDF] [Supplementary material]  

Nils W. G. Lambrecht, Iskandar Yakubov, Cindy Zer, and George Sachs

Transcriptomes of purified gastric ECL and parietal cells: identification of a novel pathway regulating acid secretion
Physiol. Genomics 25: 153-165, 2006. First published January 10, 2006; doi:10.1152/physiolgenomics.00271.2005 [Abstract] [Full Text] [PDF]  

Toolbox:

Martin J. Hessner, Bixia Xiang, Shuang Jia, Rhonda Geoffrey, Shannon Holmes, Lisa Meyer, Sanaa Muheisen, and Xujing Wang

Three-color cDNA microarrays with prehybridization quality control yield gene expression data comparable to that of commercial platforms
Physiol. Genomics 25: 166-178, 2006. First published January 10, 2006; doi:10.1152/physiolgenomics.00243.2005 [Abstract] [Full Text] [PDF] [Supplemental Tables]  

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