Physiol. Genomics -- Table of Contents (August 11 2005, 22 [3])

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CALL FOR PAPERS: Comparative Genomics:

Yasushi Okamura, Atsuo Nishino, Yoshimichi Murata, Koichi Nakajo, Hirohide Iwasaki, Yukio Ohtsuka, Motoko Tanaka-Kunishima, Nobuyuki Takahashi, Yuji Hara, Takashi Yoshida, Motohiro Nishida, Haruo Okado, Hirofumi Watari, Ian A. Meinertzhagen, Nori Satoh, Kunitaro Takahashi, Yutaka Satou, Yasunobu Okada, and Yasuo Mori: Comprehensive analysis of the ascidian genome reveals novel insights into the molecular evolution of ion channel genes
Physiol. Genomics 22: 269-282, 2005. First published May 24, 2005; doi:10.1152/physiolgenomics.00229.2004 [Abstract] [Full Text] [PDF] [Supplemental Figures and Table]

Research Articles:

M. Dominik Fischer, Murat T. Budak, Marina Bakay, J. Rafael Gorospe, D. Kjellgren, F. Pedrosa-Domellöf, Eric P. Hoffman, and Tejvir S. Khurana: Definition of the unique human extraocular muscle allotype by expression profiling
Physiol. Genomics 22: 283-291, 2005. First published April 26, 2005; doi:10.1152/physiolgenomics.00158.2004 [Abstract] [Full Text] [PDF] [Supplemental Figures and Tables]

Chenhao Fan, Dumitru A. Iacobas, Dan Zhou, Qiaofang Chen, James K. Lai, Orit Gavrialov, and Gabriel G. Haddad: Gene expression and phenotypic characterization of mouse heart after chronic constant or intermittent hypoxia
Physiol. Genomics 22: 292-307, 2005. First published May 31, 2005; doi:10.1152/physiolgenomics.00217.2004 [Abstract] [Full Text] [PDF] [Supplemental Tables and Figures]

A. Vengellur, J. M. Phillips, J. B. Hogenesch, and J. J. LaPres: Gene expression profiling of hypoxia signaling in human hepatocellular carcinoma cells
Physiol. Genomics 22: 308-318, 2005. First published June 7, 2005; doi:10.1152/physiolgenomics.00045.2004 [Abstract] [Full Text] [PDF] [Supplemental Tables]

Ulrika Hägg, Maria E. Johansson, Julia Grönros, Andrew S. Naylor, Ingibjörg H. Jonsdottir, Göran Bergström, Per-Arne Svensson, and Li-ming Gan: Gene expression profile and aortic vessel distensibility in voluntarily exercised spontaneously hypertensive rats: potential role of heat shock proteins
Physiol. Genomics 22: 319-326, 2005. First published May 24, 2005; doi:10.1152/physiolgenomics.00073.2005 [Abstract] [Full Text] [PDF]

Jorge M. O. Fernandes, Matthew G. Mackenzie, Greg Elgar, Yuzuru Suzuki, Shugo Watabe, James R. Kinghorn, and Ian A. Johnston: A genomic approach to reveal novel genes associated with myotube formation in the model teleost, Takifugu rubripes
Physiol. Genomics 22: 327-338, 2005. First published May 31, 2005; doi:10.1152/physiolgenomics.00087.2005 [Abstract] [Full Text] [PDF] [Supplemental Tables]

Patrick A. Keller, Lorenz Lehr, Jean-Paul Giacobino, Yves Charnay, Françoise Assimacopoulos-Jeannet, and Natalia Giovannini: Cloning, ontogenesis, and localization of an atypical uncoupling protein 4 in Xenopus laevis
Physiol. Genomics 22: 339-345, 2005. First published May 24, 2005; doi:10.1152/physiolgenomics.00012.2005 [Abstract] [Full Text] [PDF]

Robert A. Jolly, Keith M. Goldstein, Tao Wei, Hong Gao, Peining Chen, Shuguang Huang, Jean-Marie Colet, Timothy P. Ryan, Craig E. Thomas, and Shawn T. Estrem: Pooling samples within microarray studies: a comparative analysis of rat liver transcription response to prototypical toxicants
Physiol. Genomics 22: 346-355, 2005. First published May 24, 2005; doi:10.1152/physiolgenomics.00260.2004 [Abstract] [Full Text] [PDF] [Supplemental Material]

Harm van Bakel, Eric Strengman, Cisca Wijmenga, and Frank C. P. Holstege: Gene expression profiling and phenotype analyses of S. cerevisiae in response to changing copper reveals six genes with new roles in copper and iron metabolism
Physiol. Genomics 22: 356-367, 2005. First published May 10, 2005; doi:10.1152/physiolgenomics.00055.2005 [Abstract] [Full Text] [PDF] [Supplemental Figures]

Andrea De Biase, Susan M. Knoblach, Simone Di Giovanni, Chenguang Fan, Annamaria Molon, Eric P. Hoffman, and Alan I. Faden: Gene expression profiling of experimental traumatic spinal cord injury as a function of distance from impact site and injury severity
Physiol. Genomics 22: 368-381, 2005. First published June 7, 2005; doi:10.1152/physiolgenomics.00081.2005 [Abstract] [Full Text] [PDF] [Supplemental material]

Angela Goytain and Gary A. Quamme: Functional characterization of ACDP2 (ancient conserved domain protein), a divalent metal transporter
Physiol. Genomics 22: 382-389, 2005. First published May 17, 2005; doi:10.1152/physiolgenomics.00058.2005 [Abstract] [Full Text] [PDF]

W. Huygens, M. A. I. Thomis, M. W. Peeters, J. Aerssens, R. Vlietinck, and G. P. Beunen: Quantitative trait loci for human muscle strength: linkage analysis of myostatin pathway genes
Physiol. Genomics 22: 390-397, 2005. First published May 24, 2005; doi:10.1152/physiolgenomics.00010.2005 [Abstract] [Full Text] [PDF] [Supplemental Material]

Sophie Le Fur, Delphine Fradin, Pascal Boileau, and Pierre Bougnères: Association of Kir6.2 and INS VNTR variants with glucose homeostasis in young obese
Physiol. Genomics 22: 398-401, 2005. First published June 14, 2005; doi:10.1152/physiolgenomics.00090.2005 [Abstract] [Full Text] [PDF]

John J. Eady, Gary M. Wortley, Yvette M. Wormstone, Jackie C. Hughes, Siân B. Astley, Robert J. Foxall, Joanne F. Doleman, and Ruan M. Elliott: Variation in gene expression profiles of peripheral blood mononuclear cells from healthy volunteers
Physiol. Genomics 22: 402-411, 2005. First published July 12, 2005; doi:10.1152/physiolgenomics.00080.2005 [Abstract] [Full Text] [PDF]

Toolbox:

Mira Wouters, Karine Smans, and Jean-Marie Vanderwinden: W^ZsGreen/+: a new green fluorescent protein knock-in mouse model for the study of KIT-expressing cells in gut and cerebellum
Physiol. Genomics 22: 412-421, 2005. First published June 14, 2005; doi:10.1152/physiolgenomics.00105.2005 [Abstract] [Full Text] [PDF]

Cover Caption:

Cover Cover: V-ATPase (labeled with vhaSFD::GFP fusion protein) lines the tubule lumen, but only over principal cells. Nuclei, counterstained with DAPI, are in blue. Another 12 plasma membrane V-ATPase subunits show a similar expression signature to this subunit. This, along with microarray data and phenotypic analysis of flies for which lethal V-ATPase subunit alleles are available, allows for genetic characterization of the plasma membrane V-ATPase in an epithelial tissue. For details, see Allan AK, Du J, Davies SA, and Dow JAT. Genome-wide survey of V-ATPase genes in Drosophila reveals a conserved renal phenotype for lethal alleles. Physiol. Genomics 22: 128-138, 2005 First published April 26, 2005; doi: 10.1152/physiolgenomics.00233.2004.