Physiol. Genomics -- Table of Contents (May 11 2005, 21 [3])

HOME

HELP

FEEDBACK

SUBSCRIPTIONS

Translational Physiology:

Elizabeth S. Klings, Surinder Safaya, Adeboye H. Adewoye, Adam Odhiambo, Garrett Frampton, Marc Lenburg, Norman Gerry, Paola Sebastiani, Martin H. Steinberg, and Harrison W. Farber: Differential gene expression in pulmonary artery endothelial cells exposed to sickle cell plasma
Physiol. Genomics 21: 293-298, 2005. First published March 1, 2005; doi:10.1152/physiolgenomics.00246.2004 [Abstract] [Full Text] [PDF] [Supplemental Tables]

Research Articles:

Michelle M. Kittleson, Khalid M. Minhas, Rafael A. Irizarry, Shui Q. Ye, Gina Edness, Elayne Breton, John V. Conte, Gordon Tomaselli, Joe G. N. Garcia, and Joshua M. Hare: Gene expression analysis of ischemic and nonischemic cardiomyopathy: shared and distinct genes in the development of heart failure
Physiol. Genomics 21: 299-307, 2005. First published March 15, 2005; doi:10.1152/physiolgenomics.00255.2004 [Abstract] [Full Text] [PDF] [Supplemental Tables and Figures]

J. Gregory Maresh, Huaxia Xu, Nan Jiang, C. Gary Gairola, and Ralph V. Shohet: Tobacco smoke dysregulates endothelial vasoregulatory transcripts in vivo
Physiol. Genomics 21: 308-313, 2005. First published February 22, 2005; doi:10.1152/physiolgenomics.00310.2004 [Abstract] [Full Text] [PDF]

Henk P. J. Buermans, Everaldo M. Redout, Anja E. Schiel, René J. P. Musters, Marian Zuidwijk, Paul P. Eijk, Cornelis van Hardeveld, Soemini Kasanmoentalib, Frans C. Visser, Bauke Ylstra, and Warner S. Simonides: Microarray analysis reveals pivotal divergent mRNA expression profiles early in the development of either compensated ventricular hypertrophy or heart failure
Physiol. Genomics 21: 314-323, 2005. First published February 22, 2005; doi:10.1152/physiolgenomics.00185.2004 [Abstract] [Full Text] [PDF] [Supplemental Table]

Joost B. Vos, Marianne A. van Sterkenburg, Klaus F. Rabe, Joost Schalkwijk, Pieter S. Hiemstra, and Nicole A. Datson: Transcriptional response of bronchial epithelial cells to Pseudomonas aeruginosa: identification of early mediators of host defense
Physiol. Genomics 21: 324-336, 2005. First published February 8, 2005; doi:10.1152/physiolgenomics.00289.2004 [Abstract] [Full Text] [PDF]

Angela Goytain and Gary A. Quamme: Functional characterization of human SLC41A1, a Mg²⁺ transporter with similarity to prokaryotic MgtE Mg²⁺ transporters
Physiol. Genomics 21: 337-342, 2005. First published February 15, 2005; doi:10.1152/physiolgenomics.00261.2004 [Abstract] [Full Text] [PDF]

Daisuke Hishikawa, Yeon-Hee Hong, Sang-gun Roh, Hisae Miyahara, Yukihiko Nishimura, Ai Tomimatsu, Hiroaki Tsuzuki, Chizu Gotoh, Masaaki Kuno, Ki-Choon Choi, Hong-gu Lee, Kwang-keun Cho, Hisashi Hidari, and Shinichi Sasaki: Identification of genes expressed differentially in subcutaneous and visceral fat of cattle, pig, and mouse
Physiol. Genomics 21: 343-350, 2005. First published March 22, 2005; doi:10.1152/physiolgenomics.00184.2004 [Abstract] [Full Text] [PDF]

Ralph L. House, Joseph P. Cassady, Eugene J. Eisen, Thomas E. Eling, Jennifer B. Collins, Sherry F. Grissom, and Jack Odle: Functional genomic characterization of delipidation elicited by trans-10, cis-12-conjugated linoleic acid (t10c12-CLA) in a polygenic obese line of mice
Physiol. Genomics 21: 351-361, 2005; doi:10.1152/physiolgenomics.00244.2004 [Abstract] [Full Text] [PDF] [Supplemental Tables]

Julie Dutil, Vasiliki Eliopoulos, Éve-Lyne Marchand, Alison M. Devlin, Johanne Tremblay, Kalyani Prithiviraj, Pavel Hamet, Annik Migneault, Denis deBlois, and Alan Y. Deng: A quantitative trait locus for aortic smooth muscle cell number acting independently of blood pressure: implicating the angiotensin receptor AT1B gene as a candidate
Physiol. Genomics 21: 362-369, 2005. First published March 1, 2005; doi:10.1152/physiolgenomics.00063.2004 [Abstract] [Full Text] [PDF]

Gus J. Menger, Kim Lu, Terry Thomas, Vincent M. Cassone, and David J. Earnest: Circadian profiling of the transcriptome in immortalized rat SCN cells
Physiol. Genomics 21: 370-381, 2005. First published March 15, 2005; doi:10.1152/physiolgenomics.00224.2004 [Abstract] [Full Text] [PDF] [Supplemental Tables and Figures]

Ali Hassan, Ying Tian, Wei Zheng, Hong Ji, Kathryn Sandberg, and Joseph G. Verbalis: Small interfering RNA-mediated functional silencing of vasopressin V₂ receptors in the mouse kidney
Physiol. Genomics 21: 382-388, 2005. First published March 22, 2005; doi:10.1152/physiolgenomics.00147.2004 [Abstract] [Full Text] [PDF]

Robert D. Barber, Dan W. Harmer, Robert A. Coleman, and Brian J. Clark: GAPDH as a housekeeping gene: analysis of GAPDH mRNA expression in a panel of 72 human tissues
Physiol. Genomics 21: 389-395, 2005. First published March 15, 2005; doi:10.1152/physiolgenomics.00025.2005 [Abstract] [Full Text] [PDF] [Supplemental Data]

Göran Karlsson, Yingchun Liu, Jonas Larsson, Marie-José Goumans, Ju-Seog Lee, Snorri S. Thorgeirsson, Markus Ringnér, and Stefan Karlsson: Gene expression profiling demonstrates that TGF-ß1 signals exclusively through receptor complexes involving Alk5 and identifies targets of TGF-ß signaling
Physiol. Genomics 21: 396-403, 2005. First published March 15, 2005; doi:10.1152/physiolgenomics.00303.2004 [Abstract] [Full Text] [PDF] [Supplemental Figure]

Sheila Ernest, Angela Hosack, William E. O’Brien, David S. Rosenblatt, and Joseph H. Nadeau: Homocysteine levels in A/J and C57BL/6J mice: genetic, diet, gender, and parental effects
Physiol. Genomics 21: 404-410, 2005. First published March 1, 2005; doi:10.1152/physiolgenomics.00199.2004 [Abstract] [Full Text] [PDF] [Supplemental Table]

Nancy C. Jerez-Timaure, Eugene J. Eisen, and Daniel Pomp: Fine mapping of a QTL region with large effects on growth and fatness on mouse chromosome 2
Physiol. Genomics 21: 411-422, 2005. First published March 15, 2005; doi:10.1152/physiolgenomics.00256.2004 [Abstract] [Full Text] [PDF]

Natanja Kirschbaum-Slager, Raphael Bessa Parmigiani, Anamaria Aranha Camargo, and Sandro José de Souza: Identification of human exons overexpressed in tumors through the use of genome and expressed sequence data
Physiol. Genomics 21: 423-432, 2005. First published March 22, 2005; doi:10.1152/physiolgenomics.00237.2004 [Abstract] [Full Text] [PDF] [Supplemental Data]

Cover Caption:

Cover Cover: Expression of the ife-4::GFP transgene as an extrachromosomal array during Caenorhabditis elegans development. ife-4::GFP(lsEx385) animals were hypochlorite treated to obtain embryos and grown to the desired developmental stages. Animals in larval stage 4 were imaged with a Nomarski miscroscope (top left) and epifluorescence (top right). Polysomal behavior of mRNAs for ife-4(ok320) vs. N2 in subpopulations of C. elegans defined by developmental expression patterns (bottom). For details, see Trutschl M, Dinkova TD, and Rhoads RE. Application of machine learning and visualization of heterogenous data sets to uncover relationships between translation and developmental state expression of C. elegans mRNAs. Physiol. Genomics 21: 264-273, 2005. First published February 8, 2005; doi: 10.1152/physiolgenomics.00307.2004.