| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
|
|
|
|||||||
|
|||||||||
Toolbox
1 Department of Animal Science
2 Center for Animal Functional Genomics
3 Genomics Technology Support Facility, Michigan State University, East Lansing, Michigan 48824
4 Department of Animal Science, Cornell University, Ithaca, New York 14853
5 Department of Animal Sciences, University of Arizona, Tucson, Arizona 85721
6 Department of Animal Science, University of California, Davis, California 95616
7 Department of Animal Sciences, University of Missouri, Columbia, Missouri 65211
8 Department of Animal and Veterinary Science, University of Idaho, Moscow, Idaho 83844
9 United States Department of Agriculture, Agricultural Research Service, United States Meat Animal Research Center, Clay Center, Nebraska 68933
10 United States Department of Agriculture, Agricultural Research Service, Beltsville Agricultural Research Center, Beltsville, Maryland 20705
A cDNA microarray resource has been developed with the goal of providing integrated functional genomics resources for cattle. The National Bovine Functional Genomics Consortium’s (NBFGC) expressed sequence tag (EST) collection was established in 2001 to develop resources for functional genomics research. The NBFGC EST collection and microarray contains 18,263 unique transcripts, derived from many different tissue types and various physiologically important states within these tissues. The NBFGC microarray has been tested for false-positive rates using self-self hybridizations and was shown to yield robust results in test microarray experiments. A web-accessible database has been established to provide pertinent data related to NBFGC clones, including sequence data, BLAST results, and ontology information. The NBFGC microarray represents the largest cDNA microarray for a livestock species prepared to date and should prove to be a valuable tool in studying genome-wide gene expression in cattle.
expressed sequence tag; bovine
This article has been cited by other articles:
|
|
 |
|
  Q. Li, F. Jimenez-Krassel, J. J Ireland, and G. W Smith Gene expression profiling of bovine preovulatory follicles: gonadotropin surge and prostanoid-dependent up-regulation of genes potentially linked to the ovulatory process Reproduction, February 1, 2009; 137(2): 297 - 307. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Bettegowda, O. V. Patel, K.-B. Lee, K.-E. Park, M. Salem, J. Yao, J. J. Ireland, and G. W. Smith Identification of Novel Bovine Cumulus Cell Molecular Markers Predictive of Oocyte Competence: Functional and Diagnostic Implications Biol Reprod, August 1, 2008; 79(2): 301 - 309. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. J. Collier, J. L. Collier, R. P. Rhoads, and L. H. Baumgard Invited Review: Genes Involved in the Bovine Heat Stress Response J Dairy Sci, February 1, 2008; 91(2): 445 - 454. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Bauersachs, K. Mitko, H. Blum, and E. Wolf Technical Note: Bovine Oviduct and Endometrium Array Version 1: A Tailored Tool for Studying Bovine Endometrium Biology and Pathophysiology J Dairy Sci, September 1, 2007; 90(9): 4420 - 4423. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 G. W. Smith and G. J. M. Rosa Interpretation of microarray data: Trudging out of the abyss towards elucidation of biological significance J Anim Sci, March 1, 2007; 85(13_suppl): E20 - E23. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
O. V Patel, A. Bettegowda, J. J Ireland, P. M Coussens, P. Lonergan, and G. W Smith Functional genomics studies of oocyte competence: evidence that reduced transcript abundance for follistatin is associated with poor developmental competence of bovine oocytes Reproduction, January 1, 2007; 133(1): 95 - 106. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. S. D. Weber, S. A. Madsen-Bouterse, G. J. M. Rosa, S. Sipkovsky, X. Ren, P. E. Almeida, R. Kruska, R. G. Halgren, J. L. Barrick, and J. L. Burton Analysis of the bovine neutrophil transcriptome during glucocorticoid treatment Physiol Genomics, December 13, 2006; 28(1): 97 - 112. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Reverter, N. J. Hudson, Y. Wang, S.-H. Tan, W. Barris, K. A. Byrne, S. M. McWilliam, C. D. K. Bottema, A. Kister, P. L. Greenwood, et al. A gene coexpression network for bovine skeletal muscle inferred from microarray data Physiol Genomics, December 13, 2006; 28(1): 76 - 83. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. M. Saama, O. V. Patel, A. Bettegowda, J. J. Ireland, and G. W. Smith Novel algorithm for transcriptome analysis Physiol Genomics, December 13, 2006; 28(1): 62 - 66. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. J. Collier, C. M. Stiening, B. C. Pollard, M. J. VanBaale, L. H. Baumgard, P. C. Gentry, and P. M. Coussens Use of gene expression microarrays for evaluating environmental stress tolerance at the cellular level in cattle J Anim Sci, April 1, 2006; 84(13_suppl): E1 - E. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Liang and B. Ventura Physiological genomics in PG and beyond: October to December 2005 Physiol Genomics, December 14, 2005; 24(1): 1 - 3. [Full Text] [PDF]
|
|
|
|
 |
|
 J. E. Womack Advances in livestock genomics: Opening the barn door Genome Res., December 1, 2005; 15(12): 1699 - 1705. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. R. Nambiar, S. R. Boutin, R. Raja, and D. W. Rosenberg Global Gene Expression Profiling: A Complement to Conventional Histopathologic Analysis of Neoplasia Vet. Pathol., November 1, 2005; 42(6): 735 - 752. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Yao, X. Ren, J. J. Ireland, P. M. Coussens, T. P. L. Smith, and G. W. Smith Generation of a bovine oocyte cDNA library and microarray: resources for identification of genes important for follicular development and early embryogenesis Physiol Genomics, September 16, 2004; 19(1): 84 - 92. [Abstract] [Full Text] [PDF]
|
|
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
| Visit Other APS Journals Online |
