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Physiol. Genomics (August 1, 2006). doi:10.1152/physiolgenomics.00114.2006 Free Article
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Submitted on June 1, 2006
Accepted on July 27, 2006

Microarray gene expression analysis in atrophying rainbow trout muscle: A unique non-mammalian muscle degradation model

Mohamed Salem1, P. Brett Kenney1, Caird E. Rexroad III2, and Jianbo Yao1*

1 Division of Animal and Veterinary Sciences, West Virginia University, Morgantown, West Virginia, United States
2 National Center for Cool and Cold Water Aquaculture, Kearneysville, West Virginia, United States

* To whom correspondence should be addressed. E-mail: jianbo.yao{at}mail.wvu.edu.

Muscle atrophy is a physiological response to diverse physiological and pathological conditions that trigger muscle deterioration through specific cellular mechanisms. Despite different signals, the biochemical changes in atrophying muscle share many common cascades. Muscle deterioration as a physiological response to the energetic demands of fish vitellogenesis represents a unique model for studying the mechanisms of muscle degradation in non-mammalian animals. A salmonid microarray, containing 16,006 cDNAs, was used to study the transcriptome response to atrophy of fast-switch muscles from gravid rainbow trout in comparison to sterile fish. Eighty-two unique transcripts were up-regulated and 120 transcripts were down-regulated in atrophying muscles. Transcripts having gene ontology identifiers were grouped according to their functions. Muscle deterioration was associated with elevated expression of genes involved in the catheptic and collagenase proteolytic pathways; the aerobic production, buffering and utilization of ATP; and growth arrest. Whereas, atrophying muscle showed down-regulation of genes encoding a serine proteinase inhibitor, enzymes of anaerobic respiration, muscle proteins as well as genes required for RNA and protein biosynthesis/processing. Therefore, gene transcription of the trout muscle atrophy changed in a manner similar to mammalian muscle atrophy. These changes result in an arrest of normal cell growth, protein degradation, and decreased glycolytic cellular respiration that is characteristic of the fast-switch muscle. For the first time, other changes/mechanisms unique to fish were discussed including genes associated with muscle atrophy.




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