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Physiol. Genomics (March 28, 2006). doi:10.1152/physiolgenomics.00110.2005
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Submitted on May 9, 2005
Accepted on March 16, 2006

Gene expression profiling of target genes in ventilator-induced lung injury

Tamas Dolinay1, Naftali Kaminski2, Martina Felgendreher3, Hong P Kim2, Paul Reynolds4, Simon C. Watkins5, Dorte Karp6, Stefan Uhlig3, and Augustine M.K Choi2*

1 Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, United States; Department of Pulmonary Medicine, University of Debrecen, Debrecen, Hungary; Department of Pulmonary Medicine II, Josa Andras County Hospital, Nyiregyhaza, Hungary
2 Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, United States
3 Division of Pulmonary Pharmacology, Research Center Borstel, 23845 Borstel, Germany
4 Department of Environmental and Occupational Health, University of Pittsburgh School of Public Health, Pittsburgh, Pennsylvania, United States
5 Department of Cell Biology and Physiology, University of Pittsburgh, PGH, Pennsylvania, United States
6 United States

* To whom correspondence should be addressed. E-mail: choiam{at}upmc.edu.

In the lungs, high-pressure mechanical ventilation induces an inflammatory response similar to that observed in acute respiratory distress syndrome. To further characterize these responses and to compare them to classical inflammatory pathways, we performed gene expression profiling analysis of 20,000 mouse genes in isolated blood-free (to exclude genes from sequestered leukocytes) perfused mouse lungs exposed to low-pressure ventilation (10 cm H2O), high-pressure ventilation (25 cm H2O, overventilation) and LPS-treatment. A large number of inflammatory and apoptotic genes was increased by both over ventilation and LPS. However, certain growth factor-related genes, as well as genes related to development, cellular communication and the cytoskeleton, were only regulated by over ventilation. We validated and confirmed increased mRNA expression pattern of 5 genes (amphiregulin, gravin, NUR77, CYR61, interleukin-11) by real time-polymerase chain reaction; furthermore, we confirmed increased protein expression of amphiregulin by immunohistochemistry and immunoblotting assays. These genes represent novel candidate genes in ventilator-induced lung injury.




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