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Physiol. Genomics (January 30, 2007). doi:10.1152/physiolgenomics.00067.2006
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Submitted on April 18, 2006
Accepted on January 23, 2007

MPSS profiling of embryonic gonad and primordial germ cells in chicken

Heebal Kim1, Tae Sub Park2, Woon Kyu Lee3, Sunjin Moon4, Jin Nam Kim5, Ji Hye Shin5, Jin Gyoung Jung5, Seon Duk Lee5, Sang Hyun Park6, Kyung Je Park6, Mi A Kim5, Sang Su Shin6, Tae Min Kim6, Jungrye Nam7, Yeonkyung Kang5, Jeong Mook Lim4, and Jae Yong Han8*

1 Department of Agricultural Biotechnology, Seoul National University, Seoul, Korea, Republic of; Seoul National University, Graduate Program in Bioinformatics, Seoul, Korea, Republic of
2 Genomics, Avicore Biotechnology Institute, Anyang, Kyonggi-do, Korea, Republic of
3 Laboratory Animal Medicine, Yonse University, Seoul, Korea, Republic of
4 Department of Agricultural Biotechnology, Seoul National University, Seoul, Korea, Republic of
5 Genomics, Avicore biotechnology, Anyang, Kyonggi-do, Korea, Republic of
6 Department of Agricultural Biotechnology, Seoul National University, Seoul, Kyonggi-do, Korea, Republic of
7 Food and Animal Biotechnology, Seoul National University, seoul, Korea, Republic of
8 Department of Agricultural Biotechnology, Seoul National University, Seoul, Korea, Republic of; Genomics, Avicore Biotechnology Institute, Anyang, Kyonggi-do, Korea, Republic of

* To whom correspondence should be addressed. E-mail: jaehan{at}snu.ac.kr.

The massively parallel signature sequencing (MPSS) provides a greater depth of coverage than EST scan or microarray and provides a comprehensive expression profile. We used the MPSS technology to uncover gene expression profiling in the early embryonic gonads and primordial germ cells (PGCs) in the chicken. Total numbers of sequenced signatures were 1,012,533 and 995,676 for the PGCs and gonad. Using a noise distribution model, we found that 1.67 % of all signatures are expressed at a higher level in PCGs and 2.81 % of all signatures are expressed at a higher level in the gonad. The MPSS data is presented via an interactive web interface available at http://snugenome.snu.ac.kr/MPSS. The MPSS data have been submitted to the GEO of the NCBI. (Accession number GSM137300 and GSM137301 for PGCs and gonad, respectively).




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