Protein families reflect the metabolic diversity of organisms and provide support for functional prediction
Physiol. Genomics Nahum et al.
38: 250
Supplemental Tables
3 tables in Excel format.
Files in this Data Supplement:
Table S1
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Pairwise sequence data for three protein families: class III pyridoxal phosphate (PLP)-dependent aminotransferases; thiamine diphosphate (ThDP)-dependent 2-oxo acid decarboxylases; and enoyl-CoA enzymes (crotonase-like family). Sequence alignments and scores of proteins from the three organisms were obtained using the AllAllDb program of Darwin with pairwise distances estimated as point accepted mutations (PAM). Similarity thresholds were set up at £ PAM 250 over 40% of the sequence length.
Table S2
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Functional information of members of three protein families: class III pyridoxal phosphate (PLP)-dependent aminotransferases; thiamine diphosphate (ThDP)-dependent 2-oxo acid decarboxylases; and enoyl-CoA enzymes (crotonase-like family).
Table S3
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Protein family information of members of three protein families: class III pyridoxal phosphate (PLP)-dependent aminotransferases; thiamine diphosphate (ThDP)-dependent 2-oxo acid decarboxylases; and enoyl-CoA enzymes (crotonase-like family).