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Physiol. Genomics 19: 218-227, 2004. First published August 10, 2004; doi:10.1152/physiolgenomics.00129.2004
1094-8341/04 $5.00
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Received 27 May 2004; accepted in final form 5 August 2004.
Physiological Genomics 19:218-227 (2004)
1094-8341/04 $5.00 © 2004 American Physiological Society

A unifying statistical model for QTL mapping of genotype x sex interaction for developmental trajectories

Wei Zhao 1, Changxing Ma 1, James M. Cheverud 2 and Rongling Wu 1

1 Department of Statistics, University of Florida, Gainesville, Florida 32611
2 Department of Anatomy and Neurobiology, Washington University School of Medicine, St. Louis, Missouri 63110

Most organisms display remarkable differences in morphological, anatomical, and developmental features between the two sexes. It has been recognized that these sex-dependent differences are controlled by an array of specific genetic factors, mediated through various environmental stimuli. In this paper, we present a unifying statistical model for mapping quantitative trait loci (QTL) that are responsible for sexual differences in growth trajectories during ontogenetic development. This model is derived within the maximum likelihood context, incorporated by sex-stimulated differentiation in growth form that is described by mathematical functions. A typical structural model is implemented to approximate time-dependent covariance matrices for longitudinal traits. This model allows for a number of biologically meaningful hypothesis tests regarding the effects of QTL on overall growth trajectories or particular stages of development. It is particularly powerful to test whether and how the genetic effects of QTL are expressed differently in different sexual backgrounds. Our model has been employed to map QTL affecting body mass growth trajectories in both male and female mice of an F2 population derived from the large (LG/J) and small (SM/J) mouse strains. We detected four growth QTL on chromosomes 6, 7, 11, and 15, two of which trigger different effects on growth curves between the two sexes. All the four QTL display significant genotype-sex interaction effects on the timing of maximal growth rate in the ontogenetic growth of mice. The implications of our model for studying the genetic architecture of growth trajectories and its extensions to some more general situations are discussed.

EM algorithm; functional mapping; growth trajectories; mice; QTL x sex interaction




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