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Physiol. Genomics (June 9, 2009). doi:10.1152/physiolgenomics.00047.2009
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Submitted on March 10, 2009
Revised on May 20, 2009
Accepted on June 3, 2009

Distinct and novel SLC26A4/Pendrin mutations in Chinese and U.S. patients with non-syndromic hearing loss

Pu Dai1, Andrew K Stewart2, Fouad Chebib3, Ann Hsu2, Julia Rozenfeld4, Deliang Huang1, Dongyang Kang1, Va Lip5, Hong Fang5, Hong Shao5, Xin Liu1, Fei Yu1, Huijun Yuan1, Margaret Kenna5, David T. Miller5, Yiping Shen5, Weiyan Yang1, Israel Zelikovic4, Orah S. Platt5, Dongyi Han1, Seth L. Alper2*, and Bai-Lin Wu5

1 PLA General Hospital
2 Beth Israel Deaconess Med Ctr
3 Beth Israel Deaconess Medical Center
4 Rambam Medical Center
5 Children's Hospital Boston

* To whom correspondence should be addressed. E-mail: salper{at}bidmc.harvard.edu.

Mutations of the human SLC26A4/PDS gene constitute the most common cause of syndromic and non-syndromic hearing loss. Definition of the SLC26A4 mutation spectrum among different populations with sensorineural hearing loss is important for development of optimal genetic screening services for congenital hearing impairment. We screened for SLC26A4 mutations among Chinese and U.S. subjects with hearing loss using DHPLC and direct DNA sequencing. 52 of 55 Chinese subjects with deafness accompanied by enlargement of the vestibular aqueduct (EVA) exhibited at least one mutant SLC26A4 allele, whereas among 116 deaf Chinese patients without EVA SLC26A4 mutations were found in only two subjects. The spectrum of SLC26A4 mutations differed among Chinese and U.S. subjects, and included 10 previously unreported SLC26A4 variants: 4 in the Chinese population (p.E303Q, p.X329, p.X467, p.X573), and 6 in the U.S. population (p.V250A, p.D266N, p.F354S, p.D697A, p.K715N, p.E737D). Among the seven novel in-frame missense mutations, five encoded SLC26A4 proteins with substantially reduced Cl-/anion exchange activity as expressed and measured in Xenopus oocytes, but four of these were sufficiently active to allow study of anion selectivity. The only mutant polypeptide exhibiting complete loss of anion exchange function, p.E303Q, was expressed at or near the oocyte surface at near-wildtype levels. Two variants, p.F354S and p.E737D, displayed selective reduction in the relative rate of Cl-/HCO3- exchange compared to similarly measured rates of Cl-/Cl- exchange and Cl-/I- exchange. Our data show that mutation analysis of the SLC26A4 gene is of high diagnostic yield among subjects with deafness and bilateral EVA in both China and the U.S. However, the pathogenicity of monoallelic SLC26A4 gene variants in patients with hearing loss remains unclear in many instances.




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C. Runge-Samuelson and M. Olivier
The rocky road toward clinical genetic testing: insights into the physio-genetic basis of hearing loss
Physiol Genomics, October 1, 2009; 39(2): 83 - 84.
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